Thank you for your post.
Your patient is one of the significant minority of persons who does not seem to tolerate ritonavir.
Fortunately, while she is formally "treatment-experienced", the lack of demonstrable or historical suspicion of drug resistance implies that first-line options will apply.
For this reason (as well as her treatment history), I'd think that either Truvada or Epzicom would be acceptable. If staying with PIs is the first choice (a reasonable one to me), then Epzicom with unboosted atazanavir is reasonable, especially in light of her low viral load. We have a number of patients on this combination and the tolerability and effectiveness have been excellent.
While raltegravir (Isentress) has been showing remarkable results, the medication is still not yet FDA approved, nor guideline-recommended for first-line patients (or those without significant resistance). For this reason, it would be reasonable to relegate raltegravir to an alternative position for now.
I hope that this is helpful. Let us know what you decide.
BY